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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs11730786 chr4:44628881 C/T 1.54E-5 190 14.8 13.53 3.4 KM Plot
LIHC rs11733258 chr4:44618719 G/A 0.00036 189 16.07 13.17 2.7 KM Plot
LIHC rs11735925 chr4:44628812 T/A 8.84E-5 189 14.45 13.35 5.7 KM Plot
LIHC rs117406136 chr16:89974605 C/T 1.2E-6 188 14.18 10.93 2.23 KM Plot
LIHC rs117476275 chr2:86415798 C/T 0.000272 191 13.6 1.72 10.98 KM Plot
LIHC rs117526444 chr17:78371433 T/G 9.24E-6 189 13.78 7.23 3.37 KM Plot
LIHC rs117749108 chr14:58722700 G/T 4.41E-6 190 13.78 10.85 0.67 KM Plot
LIHC rs117786767 chr14:58749267 A/C 3.55E-6 191 13.78 11.63 0.67 KM Plot
LIHC rs1179087 chr6:25858704 G/T 0.000313 190 13.6 12.43 5.2 KM Plot
LIHC rs11801436 chr1:224595784 A/G 0.000103 190 13.55 13.37 5.25 KM Plot
LIHC rs11801645 chr1:224597216 C/A 0.000103 190 13.55 13.37 5.25 KM Plot
LIHC rs11805973 chr1:224619822 G/A 0.000103 190 13.55 13.37 5.25 KM Plot
LIHC rs11807763 chr1:224629499 T/A 0.000109 192 13.58 13.37 5.25 KM Plot
LIHC rs11811053 chr1:224578943 C/T 0.00013 190 13.57 12.9 5.25 KM Plot
LIHC rs11860968 chr16:1496613 T/C 2.59E-5 191 13.08 19.63 1.87 KM Plot